Version 1056
glam2 -r 15 -2 -n 1000000 -a 20 -b 45 -w 28 -o Flanks_tblastn_5000.fasta.glam2 n Flanks_tblastn_5000.fasta
If you use this program in your research, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey, "Discovering sequence motifs with arbitrary insertions and deletions", PLoS Computational Biology, 4(5):e1000071, 2008.[full text]